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This article has some little script snippets that should ease the installation of XDS and related programs like XDS-viewer , xdsstat , xdsgui. This means that you should do this as the administrator root , or have sudo rights Mac, and some Linux distros.
In case the above website is unavailable, there is a backup site. If you want to process data from the Eiger detector: see below for plugins that allow XDS to read the.
A simple way to obtain them is to create an empty folder, "cd" to that folder and then. The Qt5 graphics library is now the default for xdsgui and xds-viewer. Qt4 versions are available as xdsgui. Your friendly system administrator will then work out the specific commands to install those libraries. If in the case of Ubuntu you don't know the name of the package that provides a certain library, the. This needs a one-time installation by.
Ubuntu If the Qt5 libraries are missing, use sudo apt install libqt5gui5 libqt5printsupport5 libqt5opengl5. If Ubuntu Alternatively, tkdiff may be installed, or other graphical comparison programs, like meld or kdiff3. For Eiger data processing, a h5dump binary version 1. If the script is not used, H5ToXDS should be installed as explained , and h5dump should be installed by e. This is harmless. If you want to process. The latter may be faster, but does not work on data collected at Diamond Light Source.
INP requires the Xcode command line tools to be installed free of charge : open a Terminal window, and enter sudo xcode-select --install the download has a size of about MB; the downloader is much too pessimistic about the time it takes. Therefore, CCP4 should be installed. Open a Terminal and check the existence of the file.
Become familiar with the concept and ways to run commands as "root" - google "mac osx become root". A simple way to obtain them is is to open a Terminal, and type:. Older Macs need this version ; newer macOS should install Lastly, it is useful for e. But even if these commands do not return errors, you should also check the targets of the symlink, as shown in the output of the ls -l commands.
Again, these commands should not return an error message. If they do, the programs are not installed in the location where the symlink points to. This easily! A lot of technical detail is at [3]. There are helpful writeups e. VcXsrc seems to have a problem with coot for some people see WSL2 installation and responses. To use the X server with WSL, one has to say in the shell window.
If required, also install python and hdf5-tools. A detailed writeup for Ubuntu INP tab. If this happens, either use an external editor or use xdsgui. In the latter case, you may have to install Qt4 libraries. CCP4 7. When the Windows firewall asked whether it should allow MobaXterm communication, I answered "yes" for both private and public networks. If you want to install CCP4 as a regular user, you need as this is Linux!
A few libraries are needed before CCP4 installation tcsh is needed by CCP4; most of the others are graphics libraries; binutils provides strings :. When installing CCP4, let it "modify command line environment" for you on one of the very first screens of the installation GUI. After creating the file, WSL2 must be restarted with "wsl. Performance of coot is good enough for occasional work. For reading. Cluster Installation. Cookies help us deliver our services.
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